MCView

Features of MCView

Manifold tab

Click on the help button for step by step explanation of interface features!

• View gene expression manifold.
• Color manifold by gene expression.

Genes tab

• Two genes can be compared over the manifold.
• For changing the point size of the metacells or the selected genes in the Gene/Gene window, click on More button in top right corner of the window.
• Single-click on a cell type will make appear/disappear the metacells from this cell type.
• Double-click on a cell type will only show metacells from this cell type. A second double-click will show all metacells again.

Clicking on any metacell will select it for further examination in the Diff. Expression tab.

Diff. Expression tab

Two metacells / groups of metacells / cell types can be compared for differential expression.

Annotate tab

• Assign cell types and colors to metacells

Cell types

• You can show a boxplot summary of gene expression or gene module over metacells grouped by cell types. Click on More in the upper right corner for changing the selected gene.