MCView

Features of MCView

Manifold tab

Click on the help button for step by step explanation of interface features!

  • View gene expression manifold.
  • Color manifold by gene expression.

Genes tab

  • Two genes can be compared over the manifold.

Clicking on any metacell will select it for further examination in the Metacells tab.

Metacells tab

  • Two metacells can be specifically examined, and compared.

Choose a metacell by entering its number, or by selecting directly from the 2D-projection.

Annotate tab

  • Assign cell types and colors to metacells

2D Projection

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Gene projections

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Gene/Gene

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Vein plot

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Genes Trajectory

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Metacell flow

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Markers Heatmap

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Gene modules Heatmap

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Gene/Gene

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Differential expression

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Gene modules





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Inner-Fold Heatmap

  • to

Query 2D Projection

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Diff. Expression

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Type predictions

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Gene/Gene

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Gene metadata

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Atlas 2D Projection

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2D Projection

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Diff. Expression

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Sample/Sample

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Sample projections

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Cell types

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2D Projection

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Gene/Gene

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Differential expression

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Metacell annotation

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Cell Types



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